1.  Xing Xu, Qianqian Zhang, Jia Song, Qingyu Ruan, Weidong Ruan, Yujie Chen, Jian Yang, Xuebing Zhang, Yanling Song, Zhi Zhu, Chaoyong Yang. A Highly Sensitive, Accurate and Automated Single-cell RNA Sequencing Platform with Digital Microfluidics. Anal. Chem,2020,92,12,8599-8606.https://doi.org/10.1021/acs.analchem.0c01613


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2. Qingyu Ruan, Weidong Ruan, Xiaoye Lin, Yang Wang, Fenxiang Zou, Leiji Zhou, Zhi Zhu, Chaoyong Yang. Digital-WGS: automated, highly efficient whole-genome sequencing of single cells by digital microfluidics. Science Advances,2020, 6: eabd6454. doi: 10.1126/sciadv.abd6454


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3. Mingxia Zhang, Yuan Zou, Xing Xu, Xuebing Zhang, Mingxuan Gao, Jia Song, Peifeng Huang, Qin Chen, Zhi Zhu, Wei Lin, Richard N. Zare, Chaoyong Yang. Highly Parallel and Efficient Single Cell mRNA Sequencing with Paired Picoliter Chambers. Nature Communication, 2020,11,2118.DOI: 10.1038/s41467-020-15765-0 


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4. Jia Song, Yao Liu, Xuebing Zhang, Qiuyue Wu, Juan Gao, Wei Wang, Jin Li, Yanling Song, Chaoyong Yang. Entropy Subspace Separation-based Clustering for Noise Reduction (ENCORE) of scRNA-seq Data. Nucleic Acids Res,2020,49, e18. doi: 10.1093/nar/gkaa1157

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5. Peng Xie, Mingxuan Gao, Chunming Wang, Jianfei Zhang, Pawan Noel, Chaoyong Yang, Daniel Von Hoff, Haiyong Han, Michael Q Zhang, Wei Lin. SuperCT: a supervised-learning framework for enhanced characterization of single-cell transcriptomic profiles. Nucleic Acids Res,2019, 47(8), e48-e48.doi: 10.1093/nar/gkz116


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6. Huimin Zhang, Lingling Wu, Bingqian Lin,Yidi Wang,Yunpeng Bi, Yanling Song, Wei Wang, Chaoyong Yang. Recent Progress on Microfluidic Technology-based Circulating Tumor Cell Analysis. SCIENTIA SINICA Chimica,2019,1220-1236. https://doi.org/10.1360/SSC-2019-0033

 

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7. Yanling Song, Yuanzhi Shi, Mengjiao Huang, Wei Wang, Yang Wang, Jie Cheng, Zhichao Lei, Zhi Zhu, and Chaoyong Yang. Bioinspired Engineering of a Multivalent Aptamer-Functionalized Nanointerface to Enhance Capture and Release of Circulating Tumor Cells. Angew. Chem. Int. Ed,2019,58,8, 2236-2240. https://doi.org/10.1002/anie.201809337

 

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8. Lingling Wu, Hongming Ding, Xin Qu, Xianai Shi, Jianmin Yang, Mengjiao Huang, Jialu Zhang, Huimin Zhang, Jia Song, Lin Zhu, Yanling Song, Yuqiang Ma, Chaoyong Yang. Fluidic Multivalent Membrane Nanointerface Enables Synergetic Enrichment of Circulating Tumor Cells with High Efficiency and Viability.J. Am. Chem. Soc,2020, 142, 4800-4806. https://doi.org/10.1021/jacs.9b13782


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9. Jialu Zhang, Bingqian Lin, Lingling Wu, Mengjiao Huang, Xingrui Li, Huimin Zhang, Jia Song, Wei Wang, Gang Zhao,Yanling Song, and Chaoyong Yang. DNA Nanolithography Enables Highly Ordered Recognition Interface in Microfluidic Chip for Efficient Capture and Release of Circulating Tumor Cells. Angew. Chem. Int. Ed,2020,59,14115-14119.  https://doi.org/10.1002/anie.202005974

 

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10. Rongqin Ke, Marco Mignardi, Alexandra Pacureanu, Jessica Svedlund, Johan Botling, Carolina Wählby,Mats Nilsson.In situ sequencing for RNA analysis in preserved tissue and cells.Nature Methods,2013,10, 857–860. https://doi.org/10.1038/nmeth.2563

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11. Yuan Yu, Zhiwei Zeng, Danlin Xie, Renliang Chen, Yongqiang Sha, Shiying Huang, Wenjie Cai,Wanhua Chen, Wenjun Li, Rongqin Ke,Tao Sun. Interneuron origin and molecular diversity in the human fetal brain. Nature Neurosci,2021, 24, 1745–1756. https://doi.org/10.1038/s41593-021-00940-3


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12. Chen Lin, Meng Jiang, Ling Liu, Xiaoyuan Chen, Yuancun Zhao, Lu Chen, Yujuan Hong, Xin Wang, Chengye Hong, Xihu Yao, Rongqin Ke. Imaging of individual transcripts by amplification-based single-molecule fluorescence in situ hybridization. New Biotechnology, 2021,61: 116-123.https://doi.org/10.1016/j.nbt.2020.12.001


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13. Meng Jiang, Ling Liu, Chengye Hong, Debo Chen, Xihu Yao,Xiaoyuan Chen, Chen Lin and Rongqin Ke.Single molecule chromogenic in situ hybridization assay for RNA visualization in fixed cells and tissues. RNA ,2019, 25: 1038-1046.http://www.rnajournal.org/cgi/doi/10.1261/rna.070599.119


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14. Qingxu Liu, Jiaxin Li, Weiji Zhang, Chen Xiao, Shihao Zhang, Cheng Nian,Junhong Li, Dongxue Su,Lihong Chen,Qian Zhao, Hui Shao,Hao Zhao, Qinghua Chen,Yuxi Li,Jing Geng,Lixin Hong,Shuhai Lin,Qiao Wu, Xianming Deng,Rongqin Ke,Jin Ding,Randy L. Johnson,Xiaolong Liu,Lanfen Chen and Dawang Zhou. Glycogen accumulation and phase separation drives liver tumor initiation. Cell,2021, 184:1–18. https://doi.org/10.1016/j.cell.2021.10.001

 

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